Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs11966818 chr6:15259116 G/A 4.69E-5 511 22.78 20.38 9.43 KM Plot
HNSC rs12168162 chr22:46664855 A/G 5.41E-7 514 21.78 23.42 10.77 KM Plot
HNSC rs12229266 chr12:42859739 C/T 2.0E-5 510 21.77 22.58 16.87 KM Plot
HNSC rs12230583 chr12:42859961 A/G 3.7E-6 510 21.77 22.7 16.37 KM Plot
HNSC rs12231335 chr12:42862108 A/G 1.06E-5 505 21.53 22.78 16.62 KM Plot
HNSC rs12416191 chr10:111680690 C/T 2.7E-5 511 26.8 22.15 16.38 KM Plot
HNSC rs12422938 chr12:42868057 G/A 3.14E-5 508 22.1 22.67 17.52 KM Plot
HNSC rs12472039 chr2:99866930 T/C 4.39E-6 504 6.47 22.1 21.78 KM Plot
HNSC rs1250129 chr4:1254930 C/T 1.21E-5 515 23.98 20.15 14.7 KM Plot
HNSC rs12609236 chr19:2410731 G/C 1.6E-14 506 22.15 21.37 2.55 KM Plot
HNSC rs12609332 chr19:2410829 C/T 1.6E-14 506 22.15 21.37 2.55 KM Plot
HNSC rs12609621 chr19:2411654 G/A 1.6E-14 506 22.15 21.37 2.55 KM Plot
HNSC rs12611269 chr19:2411685 A/G 1.6E-14 506 22.15 21.37 2.55 KM Plot
HNSC rs12617324 chr2:99926068 A/G 3.57E-5 514 9.77 20.15 22.58 KM Plot
HNSC rs12753928 chr1:26558687 T/C 1.5E-5 514 6.8 21.37 22.1 KM Plot